Tool calls with middleware. If you deploy an agent into a production system - you design it to use a set of curated whitelisted of bespoke tool calls against services in your stack.

Also, You should never connect an agent directly to a sensitive database server or an order/fulfillment system, etc. Rather, you'd use "middleware proxy" to arbitrate the requests, consult with a policy engine, log processing context, etc before relaying the requests on to the target system.

Also consider subtleties in the threat model and types of attack vector. how many systems the agent(s) connect to concurrently. See the lethal trifecta https://simonwillison.net/2025/Jun/16/the-lethal-trifecta/

The middleware proxy approach unop mentioned is the right pattern - you need an enforcement point the agent can't bypass.

At keypost.ai we're building exactly this for MCP pipelines. The proxy evaluates every tool call against deterministic policy before it reaches the actual tool. No LLM in the decision path, so no reasoning around the rules.

Re: chrisjj's point about "fix the program" - the challenge is that agents are non-deterministic by design. You can't unit test every possible action sequence. So you need runtime enforcement as a safety net, similar to how we use IAM even for well-tested code.

The human-in-the-loop suggestion works but doesn't scale. What we're seeing teams want is conditional human approval - only trigger review when the action crosses a risk threshold (first time deleting in prod, spend over $X, etc.), not for every call.

The audit trail gap is real. Most teams log tool calls but not the policy decision. When something goes wrong, you want to know: was it allowed by policy, or did policy not cover this case?

If one asked the same about any other kind program that was known to be likely to produce incorrect and damaging output, the answer would be obvious. Fix the program.

It is instructive to consider why the same does not apply in this case.

And see https://www.schneier.com/blog/archives/2026/01/why-ai-keeps-... .

Human in the loop for certain actions.

But how do you get the bot to comply?